Enterobacter lignolyticus: A Lignin Eating Microbe With Biofuel Production Potential

Nature designed lignin, the tough woody polymer in the walls of plant cells, to bind and protect the cellulose sugars that plants use for energy. For this reason, lignin is a major challenge for those who would extract those same plant sugars and use them to make advanced biofuels. As part of their search for economic ways to overcome the lignin challenge, researchers at the Joint BioEnergy Institute (JBEI) have characterized the enzymatic activity of a rain forest microbe that breaks down lignin essentially by breathing it.

"Using a combination of transcriptomics and proteomics we observed the anaerobe Enterobacter lignolyticus SCF1 as it grows on lignin," says Blake Simmons, a chemical engineer who heads JBEI's Deconstruction Division. "We detected significant lignin degradation over time by absorbance, suggesting that enzymes in E. lignolyticus could be used to deconstruct lignin and improve biofuels production. Our results also demonstrate the value of a multi-omics approach for providing insight into the natural processes of bacterial lignin decomposition."

Not only does lignin inhibit access to cellulose, the by-products of lignin degradation can also be toxic to microbes employed to ferment sugars into fuels. This makes finding microbes that can tolerate a lignin environment a priority for biofuels research. Tropical rainforests harbor anaerobic microbes that actually utilize lignin as their sole source of carbon. Kristen DeAngelis, a microbial ecologist formerly of JBEI and now with the University of Massachusetts, has led expeditions to the Luquillo Experimental Forest where she and her crew harvested soil microbes.

"Tropical soil microbes are responsible for the nearly complete decomposition of leaf plant litter in as little as eighteen months," she says. "The fast growth, high efficiency and specificity of enzymes employed in the anaerobic litter deconstruction carried out by these tropical soil bacteria make them useful templates for improving biofuel production."

In an earlier study at JBEI led by DeAngelis, E. lignolyticus SCF1 is a member, was shown to be capable of anaerobic lignin degradation, but the enzymes behind this degradation were unknown. Through their multi-omics approach plus measurements of enzyme activities, DeAngelis, Simmons and their colleagues were able to characterize the mechanisms by which E. lignolyticus SCF1 is able to degrade lignin during anaerobic growth conditions.

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