Showing posts with label cyanobacteria. Show all posts
Showing posts with label cyanobacteria. Show all posts

Tuesday, December 01, 2015

Now THAT'S Green Power: a Fuel Cell Using Cyanobacteria Respiration and Photosynthesis


Researchers from Concordia University in Montreal are looking to tap into what may be the most plentiful yet overlooked source of power in the world. The group has invented a power cell that harnesses the electricity created during the natural processes of photosynthesis and respiration in blue-green algae.

The microorganisms, also known as cyanobacteria, can be found in just about any ecosystem on the planet, across all latitudes, with respiration and photosynthesis taking place in the organism's cells both involving electron transfer chains.

"By taking advantage of a process that is constantly occurring all over the world, we've created a new and scalable technology that could lead to cheaper ways of generating carbon-free energy," says Concordia engineering professor Muthukumaran Packirisamy.

We've seen algae put to similar use in a building in Germany, and on a smaller scale in algae-powered lamps, but algae is probably better know for its potential to produce energy as a biodiesel feedstock.

The Concordia group's prototype photosynthetic power cell is currently small scale, with the algae being placed in an anode chamber, alongside the cathode and proton exchange membrane that make up the unit. An external load connected to the device extracts the electrons released by the algae to the electrode surface.

According to the paper, the team was able to measure open-circuit voltage as high as 993 millivolts, while a peak power of 175 microwatts was obtained under an external load of 850 ohms. The team claims its Micro Photosynthetic Power Cell (μPSC) could produce a power density of 36.23 microwatts/cm2, a voltage density of 80 millivolts/cm2, and a current density of 93.38 microamps/cm2 under test conditions.

Tuesday, November 24, 2015

Great Oxygenation Event had a Precedessor 100 Million Years Earlier

Earth scientists from the University of Alberta, University of Waterloo, Arizona State University, University of California Riverside, and Georgia Institute of Technology have found evidence that Earth's transition to a permanently oxygenated atmosphere was anything but smooth.

Their paper, published this month in Science Advances, uses geochemical data from sedimentary rocks in Western Australia to show that a burst of O2 production by photosynthetic cyanobacteria temporarily increased O2 concentrations in Earth's atmosphere and shallow oceans roughly 2.5 billion years ago.

"We are tracking atmospheric changes through time to understand how oxygen increased to the level needed to support complex life," says Rob Creaser, professor of earth and atmospheric sciences at the University of Alberta. "When the Earth first formed, there was no oxygen in the atmosphere. Our analytical facilities here at the U of A allowed us to conduct precise analyses of this rock sample to understand the tempo at which that oxygen built up through photosynthesis.

Creaser's lab at the University of Alberta in the Canadian Centre for Isotopic Microanalysis is one of only a few in the world with the ability to take the precise measurements of osmium needed to conduct this type of analysis. "Without this type of facility, we wouldn't be able to write this paper or investigate this process."

The new data suggest that O2 levels in the Earth's atmosphere fluctuated until enough O2 finally accumulated to create a permanently oxygenated atmosphere around 2.4 billion years ago, a transition widely known as the "Great Oxidation Event." "The onset of Earth's surface oxygenation may have been a complex process characterized by multiple 'whiffs' of O2 until a tipping point was crossed," says Creaser's former PhD student and UAlberta alumnus Brian Kendall, a professor of Earth and Environmental Sciences at the University of Waterloo and lead author on the paper.


Wednesday, November 11, 2015

Fresh Water Cyanobacteria Fossils From Stenian MesoProterozoic/Tonian NeoProterozoic

Palaeoecology of a billion-year-old non-marine cyanobacterium from the Torridon Group and Nonesuch Formation

Authors:

Miles et al

Abstract:

A new chroococcalean cyanobacterium is described from approximately 1-billion-year-old non-marine deposits of the Torridonian Group of Scotland and the Nonesuch Formation of Michigan, USA. Individual cells of the new microfossil, Eohalothece lacustrina gen. et sp. nov., are associated with benthic microbial biofilms, but the majority of samples are recovered in palynological preparations in the form of large, apparently planktonic colonies, similar to extant species of Microcystis. In the Torridonian, Eohalothece is associated with phosphatic nodules, and we have developed a novel hypothesis linking Eohalothece to phosphate deposition in ancient freshwater settings. Extant cyanobacteria can be prolific producers of extracellular microcystins, which are non-ribosomal polypeptide phosphatase inhibitors. Microcystins may have promoted the retention and concentration of sedimentary organic phosphate prior to mineralization of francolite and nodule formation. This has a further implication that the Torridonian lakes were nitrogen limited as the release of microcystins is enhanced under such conditions today. The abundance and wide distribution of Eohalothece lacustrina attests to the importance of cyanobacteria as oxygen-producing photoautotrophs in lacustrine ecosystems at the time of the Mesoproterozoic–Neoproterozoic transition.

Thursday, October 22, 2015

Did Suspension Feeding Animals in the Ediacaran Cause an Ecological Revolution in Autotrophs?

Proterozoic photosynthesis – a critical review

Author:

Butterfield

Abstract:

Chlorophyll-based photosynthesis has fuelled the biosphere since at least the early Archean, but it was the ecological takeover of oxygenic cyanobacteria in the early Palaeoproterozoic, and of photosynthetic eukaryotes in the late Neoproterozoic, that gave rise to a recognizably modern ocean–atmosphere system. The fossil record offers a unique view of photosynthesis in deep time, but is deeply compromised by differential preservation and non-diagnostic morphologies. The pervasively polyphyletic expression of modern cyanobacterial phenotypes means that few Proterozoic fossils are likely to be members of extant clades; rather than billion-year stasis, their similarity to modern counterparts is better interpreted as a combination of serial convergence and extinction, facilitated by high levels of horizontal gene transfer. There are few grounds for identifying cyanobacterial akinetes or crown-group Nostocales in the Proterozoic record. Such recognition undermines the results of various ancestral state reconstruction analyses, as well as molecular clock estimates calibrated against demonstrably problematic Proterozoic fossils. Eukaryotic organisms are likely to have acquired their (stem-group nostocalean) photoendosymbionts/plastids by at least the Palaeoproterozoic, but remained ecologically marginalized by incumbent cyanobacteria until the late Neoproterozoic appearance of suspension-feeding animals.

Tuesday, July 21, 2015

Evidence of Cyanobacterial Inhabitation on Archean Rock Surfaces

Cyanobacterial Inhabitation on Archean Rock Surfaces in the Pilbara Craton, Western Australia

Authors:

Yosuke et al

Abstract:

High abundances of 7- and 6-monomethylalkanes as well as C17 n-alkane, indicative of cyanobacteria, have been discovered near the surfaces of Archean carbonate rocks of the Fortescue Group in the Pilbara region, Western Australia. The presence of cyanobacterial biomarkers is mostly limited to the surface layer (less than 1 cm thickness) of the rocks, indicating that the cyanobacteria are an endolithic species. Biomarkers are found in bitumen I (solvent-extracted rock) and also in bitumen II (solvent-extracted decarbonated rock). The abundance of biomarkers is generally the same between both bitumen fractions in the surface layer, which suggests that the cyanobacteria penetrated into the carbonate minerals. Trace amounts of the biomarkers have also diffused into a deeper part of the rocks, but this influence is only seen in bitumen I. This implies that hydrocarbons moved toward the inside of the rock through pores and fissures in the rock fabric. In contrast, hydrocarbons in bitumen II, which mainly come from within the carbonate minerals, are isolated from the hydrocarbon migration from the outside of the rock and may be ancient indigenous organic matter. To the best of our knowledge, this is the first report of the past or modern inhabitation of cyanobacteria on Archean rocks in the Pilbara region for which hydrocarbon biomarker analyses was used.

Tuesday, June 30, 2015

Did Multicellularity in Cyanobacteria Help Drive the Great Oxidation Event?

Cyanobacteria and the Great Oxidation Event: evidence from genes and fossils

Authors:

Schirrmeister et al

Abstract:

Cyanobacteria are among the most ancient of evolutionary lineages, oxygenic photosynthesizers that may have originated before 3.0 Ga, as evidenced by free oxygen levels. Throughout the Precambrian, cyanobacteria were one of the most important drivers of biological innovations, strongly impacting early Earth's environments. At the end of the Archean Eon, they were responsible for the rapid oxygenation of Earth's atmosphere during an episode referred to as the Great Oxidation Event (GOE). However, little is known about the origin and diversity of early cyanobacterial taxa, due to: (1) the scarceness of Precambrian fossil deposits; (2) limited characteristics for the identification of taxa; and (3) the poor preservation of ancient microfossils. Previous studies based on 16S rRNA have suggested that the origin of multicellularity within cyanobacteria might have been associated with the GOE. However, single-gene analyses have limitations, particularly for deep branches. We reconstructed the evolutionary history of cyanobacteria using genome scale data and re-evaluated the Precambrian fossil record to get more precise calibrations for a relaxed clock analysis. For the phylogenomic reconstructions, we identified 756 conserved gene sequences in 65 cyanobacterial taxa, of which eight genomes have been sequenced in this study. Character state reconstructions based on maximum likelihood and Bayesian phylogenetic inference confirm previous findings, of an ancient multicellular cyanobacterial lineage ancestral to the majority of modern cyanobacteria. Relaxed clock analyses provide firm support for an origin of cyanobacteria in the Archean and a transition to multicellularity before the GOE. It is likely that multicellularity had a greater impact on cyanobacterial fitness and thus abundance, than previously assumed. Multicellularity, as a major evolutionary innovation, forming a novel unit for selection to act upon, may have served to overcome evolutionary constraints and enabled diversification of the variety of morphotypes seen in cyanobacteria today.

Thursday, June 04, 2015

Was There an Oxygen Spike, Crash and Mass Extinction During the PaleoArchean?


Variations in the abundance of photosynthetic oxygen through Precambrian and Paleozoic time in relation to biotic evolution and mass extinctions: evidence from Mn/Fe ratios

Author:

Jackson

Abstract:

This paper reports new information about variations in the abundance of photosynthetic oxygen through Precambrian and Paleozoic time. Non-detrital marine sediments (cherts, limestones, and dolomite) were analysed for NH2OH·HCl/acetic acid-extractable Mn and Fe, and the Mn/Fe ratio (a proxy for the oxidation–reduction potential of the sediment at the time of deposition) was plotted against geologic age. The method has never before been applied to ancient sediments, but previously published data produced independently by other methods confirmed its applicability and underlying assumptions. The Mn/Fe ratio was unexpectedly high ca. 3.416 Ga, implying localised oxidation due to oxygen production by cyanobacteria, but fell dramatically over the interval 3.416–3.298 Ga, suggesting mass mortality or mass extinction of early Archaean cyanobacteria owing to asteroid impacts. However, the ratio increased continuously, though at episodically varying rates, from a minimum at ∼1.8783 Ga to a maximum at ∼0.680 Ga, signifying accumulation of oxygen in the atmosphere and hydrosphere. The rate of increase was relatively high at first but dropped abruptly at some point during the interval 1.8783–1.6 Ga, possibly signalling the appearance of eukaryotic herbivores. The ratio increased exponentially from 1.6 to 0.8 Ga and then rose more rapidly from 0.8 to 0.680 Ga, indicating a late Proterozoic upsurge of oxygen production, whereupon it fell catastrophically to a minimum in the Cambrian, reflecting widespread anoxia due to mass extinction of Ediacaran organisms. The crisis at the Precambrian–Cambrian boundary was followed by a logarithmic increase from the Cambrian to the Permian, indicating a resurgence of photosynthetic activity.

Tuesday, February 24, 2015

Cyanobacteria: The Great Hub of Anaerobe and Obligate Aerobe Genomes

Deciphering Primordial Cyanobacterial Genome Functions from Protein Network Analysis

Authors:

Harel et al

Abstract:

The Great Oxidation Event (GOE) ∼2.4 billion years ago resulted from the accumulation of oxygen by the ancestors of cyanobacteria. Cyanobacteria continue to play a significant role in primary production and in regulating the global marine and limnic nitrogen cycles. Relatively little is known, however, about the evolutionary history and gene content of primordial cyanobacteria. To address these issues, we used protein similarity networks, containing proteomes from 48 cyanobacteria as the test group, and reference proteomes from 84 microbes representing four distinct metabolic groups from most reducing to most oxidizing: methanogens, obligate anaerobes (nonmethanogenic), facultative aerobes, and obligate aerobes. These four metabolic groups represent extant bioinformatic proxies for ancient redox chemistries, extending from an anoxic origin through the GOE and ultimately to obligate aerobes. Analysis of the network metric degree showed a strong relationship between cyanobacteria and obligate anaerobes, from which cyanobacteria presumably arose, for core functions that include translation, photosynthesis, energy conservation, and environmental interactions. These data were used to reconstruct primordial functions in cyanobacteria that included nine gene families involved in photosynthesis, hydrogenases, and proteins involved in defense from environmental stress. The presence of 60% of these genes in both reaction center I (RC-I) and RC-II-type bacteria may be explained by selective loss of either RC in the evolutionary history of some photosynthetic lineages. Finally, the network reveals that cyanobacteria occupy a unique position among prokaryotes as a hub between anaerobes and obligate aerobes.

Monday, September 22, 2014

Scientists Successfully 'Hack' Rubisco, "Improve" Photosynthesis

It is difficult to find fault with a process that can create food from sunlight, water and air, but for many plants, there is room for improvement. Researchers have taken an important step towards enhancing photosynthesis by engineering plants with enzymes from blue-green algae that speed up the process of converting carbon dioxide into sugars.

The results, published today in Nature, surmount a daunting hurdle on the path to boosting plant yields — a goal that is taking on increasing importance as the world’s population grows.

“With the limited ability to increase land use for agriculture, there’s a huge interest in trying to improve yield across all the major crops,” says Steven Gutteridge, a research fellow at chemical firm DuPont’s crop-protection division in Newark, Delaware.

Researchers have long wanted to increase yields by targeting Rubisco, the enzyme responsible for converting carbon dioxide into sugar. Rubisco is possibly the most abundant protein on Earth, and can account for up to half of all the soluble protein found in a leaf.

But one reason for its abundance is its inefficiency: plants produce so much Rubisco in part to compensate for its slow catalysis. Some have estimated that tinkering with Rubisco and ways to boost the concentration of carbon dioxide around it could generate up to a 60% increase in the yields of crops such as rice and wheat.

Tuesday, March 25, 2014

Cryogenian Neoproterozoic Oceans may Have Been the First Truly Productive PaleoOceans

A Neoproterozoic Transition in the Marine Nitrogen Cycle

Authors:

Sánchez-Baracaldo et al

Abstract:

The Neoproterozoic (1000–542 million years ago, Mya) was characterized by profound global environmental and evolutionary changes, not least of which included a major rise in atmospheric oxygen concentrations [1,2], extreme climatic fluctuations and global-scale glaciation [3], and the emergence of metazoan life in the oceans [4,5]. We present here phylogenomic (135 proteins and two ribosomal RNAs, SSU and LSU) and relaxed molecular clock (SSU, LSU, and rpoC1) analyses that identify this interval as a key transition in the marine nitrogen cycle. Specifically, we identify the Cryogenian (850–635 Mya) as heralding the first appearance of both marine planktonic unicellular nitrogen-fixing cyanobacteria and non-nitrogen-fixing picocyanobacteria (Synechococcus and Prochlorococcus [6]). Our findings are consistent with the existence of open-ocean environmental conditions earlier in the Proterozoic adverse to nitrogen-fixers and their evolution—specifically, insufficient availability of molybdenum and vanadium, elements essential to the production of high-yielding nitrogenases. As these elements became more abundant during the Cryogenian [7,8], both nitrogen-fixing cyanobacteria and planktonic picocyanobacteria diversified. The subsequent emergence of a strong biological pump in the ocean implied by our evolutionary reconstruction may help in explaining increased oxygenation of the Earth’s surface at this time, as well as tendency for glaciation.

Thursday, February 27, 2014

Nitrogen Fixing Cyanobacteria Colonized Open Oceans During the Cryogenian Neoproterozoic

It has long been believed that the appearance of complex multicellular life towards the end of the Precambrian (the geologic interval lasting up until 541 million years ago) was facilitated by an increase in oxygen, as revealed in the geological record. However, it has remained a mystery as to why oxygen increased at this particular time and what its relationship was to 'Snowball Earth' – the most extreme climatic changes the Earth has ever experienced – which were also taking place around then.

This new study shows that it could in fact be what was happening to nitrogen at this time that helps solve the mystery.

The researchers, led by Dr Patricia Sanchez-Baracaldo of the University of Bristol, used genomic data to reconstruct the relationships between those cyanobacteria whose photosynthesis in the open ocean provided oxygen in quantities sufficient to be fundamental in the development of complex life on Earth.

Some of these cyanobacteria were also able to transform atmospheric nitrogen into bioavailable nitrogen in sufficient quantities to contribute to the marine nitrogen cycle, delivering 'nitrogen fertiliser' to the ecosystem.

Using molecular techniques, the team were able to date when these species first appeared in the geological record to around 800 million years ago.

Dr Sanchez-Baracaldo, a Royal Society Dorothy Hodgkin Research Fellow in Bristol's Schools of Biological and Geographical Sciences said: "We have known that oxygenic photosynthesis – the process by which microbes fix carbon dioxide into carbohydrates, splitting water and releasing oxygen as a by-product – first evolved in freshwater habitats more than 2.3 billion years ago. But it wasn't until around 800 million years ago that these oxygenating cyanobacteria were able to colonise the vast oceans (two thirds of our planet) and be fertilised by enough bioavailable nitrogen to then produce oxygen – and carbohydrate food – at levels high enough to facilitate the next 'great leap forward' towards complex life.

"Our study suggests that it may have been the fixing of this nitrogen 'fertiliser' in the oceans at this time that played a pivotal role in this key moment in the evolution of life on Earth.


I'll post the paper when it becomes available at my usual 6 am Precambrian post slot.